The problem is (at least this was the case for me) that even though that's the "default" class, the users you create on your system (by default) belong to no class.
What can be done is run (as root) chsh <username>, and find the section "Class:". You'll notice there is no entry there. Type "default" after the "Class:" (don't forget a space after the colon) and save that entry. A quick logout-then-back-in for the user affected (after cap_mkdb of course) and the new limits should be in effect.
Let me know if this solved your problem.
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