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1. Panel. I have fbpanel and pypanel installed and currently experimenting with the former. It's alright but has one annoying bug with firefox. E.G. I open two tabs, for example "gmail" and "daemonforums". When I switch between them the name of the tab on the task bar doesn't change. I'm reading the forum, but it still shows "Gmail - inbox"
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Try
wbar and
visibility also, check archlinux.org screenshots section for more info.
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2. Note-taking application. I have notecase and zim installed.
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I always do
cat >> TODO for that so that will propably will not satisfy your needs
3. Clipboard manipulating application. I really got used to xfce clipboard plugin, but currently I don't want to have anything to do with xfce, gnome or kde. Is there any DE independent application of that kind?
xclip for example
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4. Taking screenshots. Same as above.
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scrot