Unfortunately I think your best bet at this point would be a clean re-install. Back up everything (data, configuration files, etc), and do a fresh install of the latest version of FreeBSD you wish to use (I'd go with 7.0 but others may recommend 6.3), install everything you had before (but with the latest version) and "port" your configuration files where necessary. I don't think there'll be an easy way.
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