Hi motsteve, welcome to daemonforums and thanks for posting!
It's interesting, I just went into the two pairs of directories with lynx.
For amd64, it seems the 6.0/All and 6.0_2012Q4/All directories are identical.
for i386 though, the two same-named directories are very different with 6.0_2012Q4/All having newer files. As I use i386 it seems I should switch over to 6.0_2012Q4.
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