After little bit of Google search I become very doubtful that my idea of putting MiniITX mother board into Thin Client is a good idea. Namely MiniITX cases are designed as a heat sinks for MiniITX mother boards.
On the bright side I found a few new MiniITX cases selling on Ebay for around
$35 including shipping.
I am not sure how MiniITX motherboards compares to SUN Netra and low end SUN Fire but I am becoming more inclined to get SUN hardware.
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