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R install problem on 6.2-Release
Hi,
I attempted to install R in a typical way: $ doas pkg_add R but it looks like there was maybe transport error? Code:
...[snip]... R-3.4.1p0:tk-8.5.19p0: ok R-3.4.1p0:zip-3.0p0: ok R-3.4.1p0:gtar-1.29: ok Fatal error: Ustar [https://ftp.openbsd.org/pub/OpenBSD/6.2/packages/amd64/R-3.4.1p0.tgz][lib/R/ library/survival/data/Rdata.rdb]: Premature end of archive Adjusting sha for /usr/local/lib/R/library/survival/data/pkg.Ay9UsKonjG from qYKF5zC3LVKeQzgymjp SPRQ60znAHu+MVlUgrNh1lFI= to 47DEQpj8HBSa+/TImW+5JCeuQeRkm5NMpJWZG3hSuFU= Look in /usr/local/share/doc/pkg-readmes for extra documentation. $ doas pkg_delete R $ doas pkg_add R $ pkg_check -vvv Code:
Packing-list sanity: ok Direct dependencies: ok Reverse dependencies: ok Files from packages: ok --- .libs-partial-R-3.4.1p0 ------------------- lib should exist lib is not a directory lib/R should exist lib/R is not a directory lib/R/lib should exist lib/R/lib is not a directory lib/R/lib/libR.so.33.0 should exist lib/R/lib/libR.so.33.0 is not a file can't read lib/R/lib/libR.so.33.0 lib/R/lib/libRblas.so.33.0 should exist lib/R/lib/libRblas.so.33.0 is not a file can't read lib/R/lib/libRblas.so.33.0 lib/R/lib/libRlapack.so.33.0 should exist lib/R/lib/libRlapack.so.33.0 is not a file can't read lib/R/lib/libRlapack.so.33.0 --- dbus-daemon-launch-helper-1.10.22p0 ------------------- can't read /usr/local/libexec/dbus-daemon-launch-helper Any ideas about how to proceed? |
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They're not retained unless PKG_CACHE is set. See pkg_add(1).
The package database is found in /var/db/pkg/. Edited to add: I think you might have a partial-R-3.4.1p0 still installed. Last edited by jggimi; 24th October 2017 at 06:45 PM. Reason: pkg_info reference |
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Oh, geez; I might have downloaded the R package like 5 or 6 times while flailing about with this issue... Oops, sorry package hoster (is that a word?).
Quote:
Code:
hanzer@lucidrine:/home/hanzer:619 $ pkg_info -A | grep -i partial hanzer@lucidrine:/home/hanzer:620 $ pkg_check Packing-list sanity: ok Direct dependencies: ok Reverse dependencies: ok Files from packages: ok --- dbus-daemon-launch-helper-1.10.22p0 ------------------- can't read /usr/local/libexec/dbus-daemon-launch-helper hanzer@lucidrine:/home/hanzer:621 $ R --version R version 3.4.1 (2017-06-30) -- "Single Candle" Copyright (C) 2017 The R Foundation for Statistical Computing Platform: x86_64-unknown-openbsd6.2 (64-bit) R is free software and comes with ABSOLUTELY NO WARRANTY. You are welcome to redistribute it under the terms of the GNU General Public License versions 2 or 3. For more information about these matters see http://www.gnu.org/licenses/. hanzer@lucidrine:/home/hanzer:622 $ R R version 3.4.1 (2017-06-30) -- "Single Candle" Copyright (C) 2017 The R Foundation for Statistical Computing Platform: x86_64-unknown-openbsd6.2 (64-bit) R is free software and comes with ABSOLUTELY NO WARRANTY. You are welcome to redistribute it under certain conditions. Type 'license()' or 'licence()' for distribution details. R is a collaborative project with many contributors. Type 'contributors()' for more information and 'citation()' on how to cite R or R packages in publications. Type 'demo()' for some demos, 'help()' for on-line help, or 'help.start()' for an HTML browser interface to help. Type 'q()' to quit R. > q() Save workspace image? [y/n/c]: n hanzer@lucidrine:/home/hanzer:623 $ |
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