Some of your hourly directories are 6 hours apart, not 4.
I would delete all the backups and let rsnapshot recreate everything. Just let it run for a day.
Less relevant:
In your backup statements, you can use just the path relative to snapshot_root, you don't need the whole path. I assume you're getting many depths of path in your backup that you don't need.
You also have a '.snapshot' vs '.snapshots' that would be avoided by not specifying the full path there.
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